Publications

Álvaro Sánchez, Andrea Arrabal, Magdalena San Román, Juan Dı́az-Colunga (2024). The optimization of microbial functions through rational environmental manipulations. Molecular Microbiology.

Javier DelaFuente, Juan Diaz-Colunga, Alvaro Sanchez, Alvaro San Millan (2024). Global epistasis in plasmid-mediated antimicrobial resistance. Molecular Systems Biology.

Juan Diaz-Colunga, Abigail Skwara, Jean CC Vila, Djordje Bajic, Álvaro Sánchez (2024). Global epistasis and the emergence of function in microbial consortia. Cell.

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Juan Diaz-Colunga, Pablo Catalan, Magdalena San Roman, Andrea Arrabal, Alvaro Sanchez (2024). Full factorial construction of synthetic microbial communities. bioRxiv.

Alvaro Sanchez, Djordje Bajic, Juan Diaz-Colunga, Abigail Skwara, Jean CC Vila, Seppe Kuehn (2023). The community-function landscape of microbial consortia. Cell Systems.

Abigail Skwara, Karna Gowda, Mahmoud Yousef, Juan Diaz-Colunga, Arjun S Raman, Alvaro Sanchez, Mikhail Tikhonov, Seppe Kuehn (2023). Statistically learning the functional landscape of microbial communities. Nature Ecology & Evolution.

Javier Ruiz, Miguel de Celis, Juan Diaz-Colunga, Jean CC Vila, Belen Benitez-Dominguez, Javier Vicente, Antonio Santos, Alvaro Sanchez, Ignacio Belda (2023). Predictability of the community-function landscape in wine yeast ecosystems. Molecular Systems Biology.

Juan Diaz-Colunga, Abigail Skwara, Karna Gowda, Ramon Diaz-Uriarte, Mikhail Tikhonov, Djordje Bajic, Alvaro Sanchez (2023). Global epistasis on fitness landscapes. Philosophical Transactions of the Royal Society B.

Juan Diaz-Colunga, Alvaro Sanchez, C Brandon Ogbunugafor (2023). Environmental modulation of global epistasis in a drug resistance fitness landscape. Nature Communications.

Juan Diaz-Colunga, Nanxi Lu, Alicia Sanchez-Gorostiaga, Chang-Yu Chang, Helen S. Cai, Joshua E. Goldford, Mikhail Tikhonov, Álvaro Sánchez (2022). Top-down and bottom-up cohesiveness in microbial community coalescence. Proceedings of the National Academy of Sciences.

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Sylvie Estrela, Juan Diaz-Colunga, Jean CC Vila, Alicia Sanchez-Gorostiaga, Alvaro Sanchez (2022). Diversity begets diversity under microbial niche construction. bioRxiv.

Juan Diaz-Colunga, Ramon Diaz-Uriarte (2021). Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?. PLOS Computational Biology.

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Chang-Yu Chang, Jean C. C. Vila, Madeline Bender, Richard Li, Madeleine C. Mankowski, Molly Bassette, Julia Borden, Stefan Golfier, Paul Gerald L. Sanchez, Rachel Waymack, Xinwen Zhu, Juan Diaz-Colunga, Sylvie Estrela, Maria Rebolleda-Gomez, Alvaro Sanchez (2021). Engineering complex communities by directed evolution. Nature Ecology & Evolution.

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Álvaro Sánchez, Jean C. C. Vila, Chang-Yu Chang, Juan Diaz-Colunga, Sylvie Estrela, María Rebolleda-Gomez (2021). Directed Evolution of Microbial Communities. Annual Review of Biophysics.

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A. F. Lima, G. May, J. Díaz-Colunga, S. Pedreiro, A. Paiva, L. Ferreira, T. Enver, F. J. Iborra, R. Pires das Neves (2018). Osmotic modulation of chromatin impacts on efficiency and kinetics of cell fate modulation. Scientific Reports.

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Silvia Márquez-Jurado, Juan Díaz-Colunga, Ricardo Pires das Neves, Antonio Martinez-Lorente, Fernando Almazán, Raúl Guantes, Francisco J. Iborra (2018). Mitochondrial levels determine variability in cell death by modulating apoptotic gene expression. Nature Communications.

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Laura Marcos-Villar, Juan Díaz-Colunga, Juan Sandoval, Noelia Zamarreño, Sara Landeras-Bueno, Manel Esteller, Ana Falcón, Amelia Nieto (2018). Epigenetic control of influenza virus: role of H3K79 methylation in interferon-induced antiviral response. Scientific Reports.

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Raúl Guantes, Juan Díaz-Colunga, Francisco J. Iborra (2016). Mitochondria and the non-genetic origins of cell-to-cell variability: More is different. BioEssays.

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